PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00023932-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family FAR1
Protein Properties Length: 296aa    MW: 34167.1 Da    PI: 9.9383
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00023932-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR143.79e-145772490
                   FAR1 24 rngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                           +++++  + f C +eg + ++kk+      ++k rr++++tr gCka+++ ++++dg ++ t++++ HnH+l+
  SMil_00023932-RA_Salv  5 KHRQVLYQYFICRREGVKPDSKKDisessvQKKIRRRKPSTRNGCKARITTTLNDDGYYVFTSFSELHNHSLV 77
                           456789999*************99****9999999************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-11577IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MKRGKHRQVL YQYFICRREG VKPDSKKDIS ESSVQKKIRR RKPSTRNGCK ARITTTLNDD  60
GYYVFTSFSE LHNHSLVTED VRHLMKFNRK MDESHQMIML KCAKSNIGPV RAFRIFKELV  120
GSFEEVGCTS KDFKNLSYTM NSYADGVDAQ LLLDSLFWSD AVAVQNSRYL VMRCPLMPRI  180
QRTVHRWLKA ASAEVISTSN MKSRNKSLMA EAFRCIGIAE GNDELADSLL TELKRWAEIN  240
SNGAQCLSPR AESKKCLNYF MLKRRKNQRE DAGNVRLVRH DSRNCGKVVE EESDEE
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3136228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-13FAR1-related sequence 5